PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086200001
Common NameGSBRNA2T00086200001, GSBRNA2T00090960001, LOC106356636, LOC106379445, LOC106444805
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 203aa    MW: 22093.8 Da    PI: 7.5609
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086200001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.21.9e-4591081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql
  GSBRNA2T00086200001   9 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQL 98 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +l+ +k+e
  GSBRNA2T00086200001  99 QIDLSCAKSE 108
                          ****999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2018109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-449106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS  60
QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI DLSCAKSELS KYQSLGILAA  120
THQSLGINLL AGANADGSTT ATVRDHHYHH HQFFPREQMF GGLDVPTGNN YDGGILAIGQ  180
ISQFQQPRAA AGDDGRRTVD PS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0808020.0AB080802.1 Arabidopsis thaliana AS2 mRNA for ASYMMETRIC LEAVES2, complete cds.
GenBankAB4738330.0AB473833.1 Arabidopsis thaliana AS2 mRNA for ASYMMETRIC LEAVES2, complete cds.
GenBankAF4478870.0AF447887.1 Arabidopsis thaliana LOB DOMAIN 6 (LBD6) mRNA, complete cds.
GenBankAY5194830.0AY519483.1 Arabidopsis thaliana ecotype Blanes AS2 (At1G65620) gene, complete cds.
GenBankBT0251630.0BT025163.1 Arabidopsis thaliana At1g65620 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5I140.0AC001229.1 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674850.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013674848.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013674847.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013674846.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013651824.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013651823.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013651822.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013651821.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013651820.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013741691.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013741690.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013741689.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013741688.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013741687.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013616633.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013616632.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013616631.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013616630.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_013616629.11e-151PREDICTED: LOB domain-containing protein 6
RefseqXP_009127447.11e-151PREDICTED: LOB domain-containing protein 6
SwissprotO044791e-127LBD6_ARATH; LOB domain-containing protein 6
TrEMBLA0A078IA771e-151A0A078IA77_BRANA; BnaA02g12180D protein
TrEMBLA0A0D3AN841e-151A0A0D3AN84_BRAOL; Uncharacterized protein
TrEMBLM4FF611e-151M4FF61_BRARP; Uncharacterized protein
STRINGBra039733.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126792531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-129LBD family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]